The attendees of the VII Proteomics Workshop are invited to apply to the “Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0” course. This event will be held from November 10th and 11th, from 9:00am to 5:00pm, as a satellite event of the Proteomics Workshop.
The participants of the satellite event must bring to the course their personal computers with Windows Operating System.
In this course we will learn how to perform protein identification and quantitative proteomics through XIC, spectral counting, and isobaric markers (e.g., TMT / iTRAQ). For this, we will use PatternLab for Proteomics 4.0 (PL), an integrated computational environment for analyzing shotgun proteomic data. PL contains modules for formatting sequence databases, performing peptide spectrum matching, statistically filtering and organizing shotgun proteomic data, extracting quantitative information from label-free and chemically labeled data, performing statistics for differential proteomics, displaying results in a variety of graphical formats, performing similarity-driven studies with de novo sequencing data, analyzing time-course experiments, and helping with the understanding of the biological significance of data in the light of the Gene Ontology. PL closely knits together all these modules in a self-contained environment, covering the principal aspects of proteomic data analysis as freely available and easily installable software (www.patternlabforproteomics.org).
PatternLab is user-friendly, simple and provides a graphical user interface.
For more information, click here.